James M. Tiedje

Research topics

• Gut microbiota and health · 3 papers
• Genomics and Phylogenetic Studies · 2 papers
• Microbial Community Ecology and Physiology · 2 papers
• Food composition and properties · 1 paper
• Probiotics and Fermented Foods · 1 paper

Frequent co-authors

• George M Garrity · 2 papers
• James R. Cole · 2 papers
• Qiong Wang · 1 paper
• Qi Wang · 1 paper
• Erick Cardenas · 1 paper
• Benli Chai · 1 paper
• Ryan J. Farris · 1 paper
• A. S. Kulam-Syed-Mohideen · 1 paper

Papers

1. Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial TaxonomyApplied and Environmental Microbiology · 2007 · 20,833 citations

   The Ribosomal Database Project (RDP) Classifier, a naïve Bayesian classifier, can rapidly and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy proposed in Bergey's Taxonomic Outline of the Prokaryotes (2nd ed., release 5.0, Springer-Verlag, New York, NY,…

2. The Ribosomal Database Project: improved alignments and new tools for rRNA analysisNucleic Acids Research · 2008 · 4,875 citations

   The Ribosomal Database Project (RDP) provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools. An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and faster…

3. Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic DatamBio · 2014 · 1,223 citations

   Butyrate-producing bacteria have recently gained attention, since they are important for a healthy colon and when altered contribute to emerging diseases, such as ulcerative colitis and type II diabetes. This guild is polyphyletic and cannot be accurately detected by 16S…