Claude W. dePamphilis

Research topics

• Plant Molecular Biology Research · 1 paper
• Plant Reproductive Biology · 1 paper
• Plant Gene Expression Analysis · 1 paper
• Genomics and Phylogenetic Studies · 1 paper
• Photosynthetic Processes and Mechanisms · 1 paper
• Protist diversity and phylogeny · 1 paper

Frequent co-authors

• Gerald A. Tuskan · 1 paper
• Stephen Paul DiFazio · 1 paper
• Stefan Jansson · 1 paper
• Jöerg Bohlmann · 1 paper
• Igor V. Grigoriev · 1 paper
• Uffe Hellsten · 1 paper
• Nicholas H. Putnam · 1 paper
• Steven Gregory Ralph · 1 paper

Papers

1. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)Science · 2006 · 4,502 citations

   We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic mapping enabled chromosome-scale reconstruction of the genome. More than 45,000 putative protein-coding genes were identified. Analysis of the assembled genome revealed…

2. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomesGenome biology · 2020 · 4,174 citations

   GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a modified "baiting and iterative mapping" approach, conducts de novo assembly, filters and disentangles the assembly graph, and produces all…